Library

Validation and Curation Workbench for Taxonomic Data

Authors: Olaf Bánki, Joe Miller, Donald Hobern, Peter Schalk, Thomas Stjernegaard Jeppesen, Markus Döring

Status: Approved
Year: 2022
Deliverable number: D10.3

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Architecture Design for a pan-European PID system for Digital Specimens

Authors: Wouter Addink, Sharif Islam, Mathias Dillen, Anton Güntsch, Soulaine Theocharides

Status: Approved
Year: 2022
Deliverable number: D7.1

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A workflow for bidirectional linking of data from literature to external resources

Authors: Donat Agosti, Terry Catapano, Reto Gmür, Puneet Kishor, Conny Naseband, Guido Sautter, Alexandre Flament, Emilie Pasche, Patrick Ruch, Alexandros Ioannidis-Pantopikos, Jose Benito Gonzalez Lopez Donat Agosti, Jose Benito Gonzalez Lopez

Status: Approved
Year: 2022
Deliverable number: D6.3

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Search and link association services: A RESTful API, which will input a link/accession number and return a ranked list of neighbours links with a confidence score

Authors: Soulaine Theocharides, Niki Kyriakopoulou

Status: Approved
Year: 2022
Deliverable number: D11.2

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Passage retrieval services: A RESTful API, which will input a set of keywords and return a set of articles/ passages ranked by relevance

Authors: Emilie Pasche, Julien Gobeill, Alexandre Flament, Jeevanthi Liyanapathirana, Pierre-André Michel, Déborah Caucheteur, Esteban Gaillac, Nona Naderi, Patrick Ruch

Status: Approved
Year: 2022
Deliverable number: D11.3

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The OpenBiodiv Knowledge Graph Rebuilt: A semantic hub on top of the ARPHA-published content and the Biodiversity Literature Repository

Authors: Lyubomir Penev, Mariya Dimitrova, Georgi Zhelezov, Teodor Georgiev

Status: Published
Year: 2022
Journal: Biodiversity Information Science and Standards
Volume/Issue: 6
Publisher: Pensoft Publishers

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Zen and the Art of Persistent Identifier Service Development for Digital Specimen

Authors: Sharif Islam, Soulaine Theocharides, Wouter Addink

Status: Published
Year: 2022
Journal: Biodiversity Information Science and Standards
Volume/Issue: 6
Publisher: Pensoft Publishers

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Enabling Published Taxonomic Data to be used to Address the Biodiversity Crisis: Biodiversity Literature Repository and TreatmentBank

Authors: Donat Agosti, Patrick Ruch, Jose Benito Gonzalez Lopez, Lyubomir Penev

Status: Published
Year: 2022
Journal: Biodiversity Information Science and Standards
Volume/Issue: 6
Publisher: Pensoft Publishers

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A Possible Workflow from New and Legacy Publications to keep the World Flora Online up to date with New Species and Augmenting Taxonomic Treatments

Authors: Donat Agosti, Laurence Benichou, Lyubomir Penev, Roger Hyam

Status: Published
Year: 2022
Journal: Biodiversity Information Science and Standards
Volume/Issue: 6
Publisher: Pensoft Publishers

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Connecting the Dots: Joint development of best practices between infrastructures in support of bidirectional data linking

Authors: Wouter Addink, Niki Kyriakopoulou

Status: Published
Year: 2022
Journal: Biodiversity Information Science and Standards
Volume/Issue: 6
Publisher: Pensoft Publishers

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ENA Source Attribute Helper: An Application Programming Interface to facilitate accurate reference to biological source data

Authors: Vikas Gupta, Joana Paupério, Josephine Burgin, Suran Jayathilaka, Guy Cochrane

Status: Published
Year: 2022
Journal: F1000Research
Volume/Issue: 11
Publisher: F1000 Research Ltd

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The European Nucleotide Archive in 2021

Authors: Carla Cummins, Alisha Ahamed, Raheela Aslam, Josephine Burgin, Rajkumar Devraj, Ossama Edbali, Dipayan Gupta, Peter W Harrison, Muhammad Haseeb, Sam Holt, Talal Ibrahim, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Kadhirvelu, Simon Kay, Manish Kumar, Ankur Lathi, Rasko Leinonen, Fabio Madeira, Nandana Madhusoodanan, Milena Mansurova, Colman O’Cathail, Matt Pearce, Stéphane Pesant, Nadim Rahman, Jeena Rajan, Gabriele Rinck, Sandeep Selvakumar, Alexey Sokolov, Swati Suman, Ross Thorne, Prabhat Totoo, Senthilnathan Vijayaraja, Zahra Waheed, Ahmad Zyoud, Rodrigo Lopez, Tony Burdett, Guy Cochrane

Status: Published
Year: 2022
Journal: Nucleic Acids Research
Volume/Issue: 50
Publisher: Oxford University Press

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Stakeholder input into the network graph provided by Third Global Biodiversity Informatics Conference (GBIC3)

Authors: Kyle Copas, Joe Miller

Status: Approved
Year: 2022
Deliverable number: D2.2

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Relational network graph for the Biodiversity Knowledge Hub (BKH)

Authors: Kyle Copas, Joe Miller

Status: Approved
Year: 2022
Deliverable number: D2.1

Download (1.06 MB)

Human and Machine Working Together towards High Quality Specimen Data: Annotation and Curation of the Digital Specimen

Authors: Sam Leeflang, Wouter Addink, Soulaine Theocharides

Status: Published
Year: 2022
Journal: Biodiversity Information Science and Standards
Volume/Issue: 6
Publisher: Pensoft Publishers

Download (0.07 MB)