Library

ENA Source Attribute Helper: An Application Programming Interface to facilitate accurate reference to biological source data

Authors: Vikas Gupta, Joana Paupério, Josephine Burgin, Suran Jayathilaka, Guy Cochrane

Status: Published
Year: 2022
Journal: F1000Research
Volume/Issue: 11
Publisher: F1000 Research Ltd

Download (2.88 MB)

The European Nucleotide Archive in 2021

Authors: Carla Cummins, Alisha Ahamed, Raheela Aslam, Josephine Burgin, Rajkumar Devraj, Ossama Edbali, Dipayan Gupta, Peter W Harrison, Muhammad Haseeb, Sam Holt, Talal Ibrahim, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Kadhirvelu, Simon Kay, Manish Kumar, Ankur Lathi, Rasko Leinonen, Fabio Madeira, Nandana Madhusoodanan, Milena Mansurova, Colman O’Cathail, Matt Pearce, Stéphane Pesant, Nadim Rahman, Jeena Rajan, Gabriele Rinck, Sandeep Selvakumar, Alexey Sokolov, Swati Suman, Ross Thorne, Prabhat Totoo, Senthilnathan Vijayaraja, Zahra Waheed, Ahmad Zyoud, Rodrigo Lopez, Tony Burdett, Guy Cochrane

Status: Published
Year: 2022
Journal: Nucleic Acids Research
Volume/Issue: 50
Publisher: Oxford University Press

Download (1.34 MB)

Stakeholder input into the network graph provided by Third Global Biodiversity Informatics Conference (GBIC3)

Authors: Kyle Copas, Joe Miller

Status: Approved
Year: 2022
Deliverable number: D2.2

Download (1.57 MB)

Relational network graph for the Biodiversity Knowledge Hub (BKH)

Authors: Kyle Copas, Joe Miller

Status: Approved
Year: 2022
Deliverable number: D2.1

Download (1.06 MB)

Human and Machine Working Together towards High Quality Specimen Data: Annotation and Curation of the Digital Specimen

Authors: Sam Leeflang, Wouter Addink, Soulaine Theocharides

Status: Published
Year: 2022
Journal: Biodiversity Information Science and Standards
Volume/Issue: 6
Publisher: Pensoft Publishers

Download (0.07 MB)

User Requirements Analysis Report

Authors: Christos Arvanitidis, Cristina Huertas Olivares, Quentin Groom, Elizabeth Bamford, Lucia Vaira, Sara Montinaro, Ana Casino, Donat Agosti, Boris Barov, Kristina Hristova, Lyubomir Penev

Status: Approved
Year: 2022
Deliverable number: D1.1

Download (2.14 MB)

Evaluation benchmark: a database of questions associated with a set of relevant articles (e.g. PMIDs) to measure the progress of the WP towards an effective search service

Authors: Déborah Caucheteur, Alexandre Flament, Sofie Meeus, Wouter Addink, Christos Arvanitidis, Bachir Balech, Mathias Dillen, Mariya Dimitrova, Juan Miguel González-Aranda, Jörg Holetschek, Sharif Islam, Thomas S. Jeppesen, Daniel Mietchen, Nicky Nicolson, Lyubomir Penev, Tim Robertson, Maarten Trekels, Olaf Bánki, Quentin Groom, Donat Agosti, Emilie Pasche, Patrick Ruch

Status: Approved
Year: 2022
Deliverable number: D11.1

Download (2.77 MB)

Web visualisation of mappings between CoL and other checklists

Authors: Olaf Bánki, Joe Miller, Donald Hobern, Thomas Stjernegaard Jeppesen, Markus Döring

Status: Approved
Year: 2022
Deliverable number: D10.4

Download (4.33 MB)

Recommendations for interoperability among infrastructures

Authors: Sofie Meeus, Wouter Addink, Donat Agosti, Christos Arvanitidis, Bachir Balech, Mathias Dillen, Mariya Dimitrova, Juan Miguel González-Aranda, Jörg Holetschek, Sharif Islam, Thomas S. Jeppesen, Daniel Mietchen, Nicky Nicolson, Lyubomir Penev, Tim Robertson, Patrick Ruch, Maarten Trekels, Quentin Groom

Status: Approved
Year: 2022
Deliverable number: D1.2

Download (2.63 MB)

Web interface for ELIXIR Contextual Data ClearingHouse

Authors: Kessy Abarenkov, Allan Zirk, Guy Cochrane, Vishnukumar Kadhirvelu, Suran Jayathilaka, Joana Paupério, Olaf Banki, Jerry Lanfear, Filipp Ivanov, Timo Piirmann, Raivo Pöhönen, Urmas Kõljalg

Status: Approved
Year: 2022
Deliverable number: D8.3

Download (3.43 MB)

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Authors: Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian Quast, Frank Oliver Glöckner, Niels Raes, Anna Sandionigi, Monica Santamaria, Wouter Addink, Jiri Vohradsky, Amandine Nunes-Jorge, Nils Peder Willassen, Jerry Lanfear

Status: Published
Year: 2021
Journal: F1000Research
Publisher: F1000 Research Ltd

Download (1.8 MB)

Network analysis of specimen co-collection

Authors: Sofie Meeus, Tom August, Maarten Trekels, Lien Reyserhove, Quentin Groom

Status: Published
Year: 2021
Publisher: BioHackrXiv Preprints

Download (4.35 MB)

Plan for Dissemination and Exploitation of Results

Authors: Ana Casino, Laura Tilley

Status: Approved
Year: 2021
Deliverable number: D3.2

Download (7.48 MB)

Data Management Plan

Authors: Lyubomir Penev, Teodor Georgiev, Boris Barov, Pavel Stoev, Kristina Hristova

Status: Approved
Year: 2021
Deliverable number: D12.9

Download (0.2 MB)

TreatmentBank: Plazi's strategies and its implementation to most efficiently liberate data from scholarly publications

Authors: Marcus Guidoti, Carolina Sokolowicz, Felipe Simoes, Valdenar Gonçalves, Tatiana Ruschel, Diego Janisch Alvares, Donat Agosti

Status: Published
Year: 2021
Journal: Biodiversity Information Science and Standards
Volume/Issue: 5
Publisher: Pensoft Publishers

Download (0.06 MB)